Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs12572278 | chr10:75504513 | C/A | 0 | 211 | 15.88 | 18.03 | 2.47 | KM Plot |
KIRP | rs12572338 | chr10:63377191 | T/C | 0 | 212 | 18.02 | 9 | 1.17 | KM Plot |
KIRP | rs12573092 | chr10:75600016 | A/G | 0 | 214 | 16.48 | 17.23 | 4.82 | KM Plot |
KIRP | rs12573407 | chr10:75048826 | G/A | 4.52E-12 | 214 | 16.53 | 11.77 | 5.6 | KM Plot |
KIRP | rs12573448 | chr10:75504512 | T/G | 0 | 211 | 15.88 | 18.03 | 2.47 | KM Plot |
KIRP | rs12587471 | chr14:65292315 | A/G | 0.000242 | 212 | 16.45 | 14.42 | 11.57 | KM Plot |
KIRP | rs12587480 | chr14:65292316 | C/G | 0.000242 | 212 | 16.45 | 14.42 | 11.57 | KM Plot |
KIRP | rs12594747 | chr15:27029084 | G/T | 0.000146 | 214 | 10.83 | 20.27 | 15.1 | KM Plot |
KIRP | rs12596222 | chr16:20445695 | C/T | 0.000368 | 213 | 16.47 | 13.6 | 1.73 | KM Plot |
KIRP | rs12600222 | chr16:20445517 | A/G | 0.000335 | 214 | 16.47 | 15.02 | 1.73 | KM Plot |
KIRP | rs12600233 | chr16:20445323 | C/G | 0.000335 | 214 | 16.45 | 16.43 | 1.73 | KM Plot |
KIRP | rs12600235 | chr16:20445348 | C/G | 0.000335 | 214 | 1.73 | 15.02 | 16.47 | KM Plot |
KIRP | rs12629226 | chr3:100028824 | A/G | 4.46E-5 | 210 | 16.43 | 18.47 | 4.67 | KM Plot |
KIRP | rs12631115 | chr3:99981943 | G/C | 2.19E-5 | 214 | 16.43 | 18.88 | 4.67 | KM Plot |
KIRP | rs12633745 | chr3:100003133 | C/T | 4.42E-5 | 211 | 16.43 | 18.88 | 4.67 | KM Plot |